PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00169.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 353aa    MW: 38597.9 Da    PI: 7.0737
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00169.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.3e-2796178271
                  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                              ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wk
  Sme2.5_00169.1_g00012.1  96 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdatnsvacpdqkqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 177
                              689********...*****999*******************************************************.*******9 PP

                  E2F_TDP  71 g 71 
                              g
  Sme2.5_00169.1_g00012.1 178 G 178
                              8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.2E-1315353IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.8E-4691183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-3495178IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.9E-2597178IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.58E-2198179IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.64E-44184286IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.36E-42185323No hitNo description
SMARTSM011388.1E-69185351IPR014889Transcription factor DP, C-terminal
PfamPF087814.4E-41186297IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLNNLEDGGK NPSEVSRGGG GTRSWGTTVS GQSVSTSSSI GSPSSRSEAA MATPASDSTF  60
HRLNNLDIHA DDAGSQGTAG NRKKKRAQRA TGGDKSGRGL RQFSMKVCEK VESKGRTTYN  120
EVADELVAEF SDATNSVACP DQKQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP  180
RTDANDIEEL KTERLSLRNR IEKKAAYLEE LEDQHVGLQN LIKRNEQLYG SGNAPSGGVA  240
LPFILVQTRP HATVEVEISE DMQLVHFDFN STPFELHDDN YILKAMNFCG RPNDGAAPQN  300
VSADGGEGPS SSMANMFQHQ HQIPHPTVPN SSGRLPTSPP LPGILKARIK HER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-4089184194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6845580.0KC684558.1 Solanum lycopersicum transcription factor DP/E2 dimerization partner-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362266.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-161DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM1AFD60.0M1AFD6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000215920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-146Transcription factor DP